rs820617 chr3:27294019 T>C
- Sequence
ttattttgtttctagcctgctatg[T/C]atacctcaatatttatatggtttc
- ASB in cell types
- breast tumor LNCaP (prostate carcinoma)
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| breast tumor | 2.60 | -1.07 | 2.00 | |||
| LNCaP (prostate carcinoma) | -1.13 | 1.65 | 1.50 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Skin_Sun_Exposed_Lower_leg, Testis