rs826682 chr2:108615932 A>C
- Sequence
ggagtttccaaacgtggaactgtc[A/C]gctaaatgtctactggtcacctct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) OCI-LY7 (diffuse large B-cell lymphoma)
- ASB for transcription factors
- SRF_HUMAN RELB_HUMAN FOXP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRF_HUMAN | 3.08 | -2.84 | 1.00 | n/a | No Hit | |||
| RELB_HUMAN | 2.60 | -2.17 | 1.00 | n/a | No Hit | |||
| FOXP1_HUMAN | 2.63 | -2.67 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP ldl cholesterol, maternal transmission distortion, stabilized warfarin dose, total cholesterol, transmission distortion
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood