rs828861 chr2:74181901 G>C
- Sequence
gatcttctgaacctctccccaccc[G/C]cctttcatcacacacagttcccct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) macrophages form periferal blood GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- SPI1_HUMAN CDK9_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.45 | 0.66 | 1.37 | n/a | No Hit | |||
| CDK9_HUMAN | 1.94 | -0.74 | 1.00 | n/a | n/a | |||
| FOXK2_HUMAN | -0.23 | 2.29 | 1.88 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, fasting blood glucose, homa-b, mitral annular calcium, parkinsons disease, triglycerides
GTEx eQTL Adipose_Subcutaneous, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood