rs830158 chr19:47436805 C>T
- Sequence
gtacaagtgtcgtagtgtctctag[C/T]cacaagggggcagtgtgggcctgt
- ASB in cell types
- A549 (lung carcinoma) esophagus muscularis mucosa esophagus squamous epithelium neutrophils from periferal blood
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.15 | 0.24 | 1.34 | -5.31 | Concordant | |||
| RAD21_HUMAN | 1.08 | 0.01 | 1.40 | n/a | n/a | |||
| SMC3_HUMAN | 1.24 | 0.24 | 1.15 | n/a | n/a |
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Motif analysis
