rs8316 chr10:72275539 C>T

Sequence
agctgggctgctcccgccccagcc[C/T]ggcccagggtgaaggaagaggcac
ASB in cell types
HepG2 (hepatoblastoma) A549 (lung carcinoma)
ASB for transcription factors
TYY1_HUMAN JUN_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TYY1_HUMAN -2.11 3.41 1.004.4·10-6 1.67 n/a No Hit
JUN_HUMAN 0.68 0.94 1.000.03 2.00 n/a No Hit
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid,  Whole_Blood

Download