rs833895 chr19:37980013 C>T
- Sequence
gcctgccctcaggaatccacaggc[C/T]ggtgggtggggagagtcagacagt
- ASB in cell types
- BEAS-2B (bronchial epithelium) foreskin keratinocyte 22RV1 (prostate carcinoma) 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- GCR_HUMAN P63_HUMAN ANDR_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.61 | 1.67 | 1.00 | n/a | No Hit | |||
| P63_HUMAN | -2.77 | 1.26 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.26 | -1.05 | 1.50 | n/a | No Hit | |||
| CTCF_HUMAN | 1.68 | -0.68 | 1.33 | -2.99 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood