rs834601 chr7:47406215 T>C
- Sequence
gaaaagcacactgcaaagatggga[T/C]gggtcaggtgtgcagctgggaggg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) BEAS-2B (bronchial epithelium) MDA-MB-134 (invasive lobular breast carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- ESR1_HUMAN GCR_HUMAN FOXA1_HUMAN ETV2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -0.14 | 1.96 | 2.20 | 0.37 | Weak Concordant | |||
| GCR_HUMAN | -0.47 | 1.43 | 1.00 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.18 | 1.53 | 2.18 | n/a | No Hit | |||
| ETV2_HUMAN | n/a | 2.55 | 2.00 | n/a | No Hit |
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Motif analysis
