rs840016 chr1:167439433 C>T
- Sequence
cagaaagcaaagcgcgttactgct[C/T]cgcgagggcgcgcaggggagccgg
- ASB in cell types
- MS-1 (Small cell lung carcinoma) GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.22 | 2.36 | 1.31 | -2.96 | Concordant | |||
| STAG1_HUMAN | 1.81 | 0.06 | 1.00 | n/a | n/a |
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Motif analysis
