rs841563 chr1:42963849 C>T
- Sequence
agttacccttggaagggagggtcg[C/T]gactctgggggcgggtgctggtaa
- ASB in cell types
- K562 (myelogenous leukemia) fetal bone marrow-derived mononuclear cells
- ASB for transcription factors
- COT1_HUMAN ARI1B_HUMAN KMT2A_HUMAN MCM7_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | -0.87 | 0.87 | 1.00 | n/a | No Hit | |||
| ARI1B_HUMAN | -0.36 | 0.36 | 1.00 | n/a | n/a | |||
| KMT2A_HUMAN | -4.42 | 2.53 | 1.50 | -2.93 | Discordant | |||
| MCM7_HUMAN | -1.25 | 2.00 | 1.00 | n/a | n/a | |||
| MITF_HUMAN | -0.57 | 1.85 | 1.25 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Left_Ventricle, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg