rs841841 chr1:42923244 T>A
- Sequence
taacaggagtaggtgggagggcag[T/A]ctcttcggaggaaacttcagaggc
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia) Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN ZBT17_HUMAN EGR2_HUMAN ZN366_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.60 | 0.96 | 1.48 | n/a | No Hit | |||
| ZBT17_HUMAN | n/a | 0.96 | 2.00 | 1.04 | Weak Concordant | |||
| EGR2_HUMAN | -1.02 | 3.16 | 2.00 | n/a | No Hit | |||
| ZN366_HUMAN | n/a | 1.53 | 2.00 | n/a | n/a |
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Motif analysis
