rs841846 chr1:42938000 C>T

Sequence
caaggagtgttgtttgtcaaacaa[C/T]tgaggcctttctggcccaaactct
ASB in cell types
K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
ESR1_HUMAN PKNX1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 0.42 1.05 1.006.4·10-3 2.04 n/a No Hit
PKNX1_HUMAN 0.35 2.04 1.000.02 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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