rs842639 chr2:60868110 G>A
- Sequence
cagtggtcttgagcaacagtacgc[G/A]tacggtaactgttaagtataatac
- ASB in cell types
- CD14+ monocytes
- ASB for transcription factors
- KAISO_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KAISO_HUMAN | 2.78 | -2.54 | 1.00 | n/a | No Hit | |||
| STAT1_HUMAN | -1.48 | 2.20 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP celiac disease, obesity with early age of onset (age >2), prop taste detection threshold, resistance to kuru in aged women despite likely exposure, schizophrenia, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid