rs847156 chr2:176097833 T>C
- Sequence
cagccaaatcctgttccattctct[T/C]aatcaccagccaagccactctccc
- ASB in cell types
- HEK293 (embryonic kidney) gastroesophageal sphincter MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line)
- ASB for transcription factors
- ZN341_HUMAN PRDM1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN341_HUMAN | n/a | 2.79 | 1.50 | 0.18 | Weak Concordant | |||
| PRDM1_HUMAN | 2.54 | -2.26 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Nerve_Tibial, Testis, Whole_Blood