rs848188 chr1:15950587 A>C
- Sequence
ggcaaaatcctcaactggcttcag[A/C]agcagcccatctggaacttgcaag
- ASB in cell types
- HCT-116 (colon carcinoma) primary B-CLL cells
- ASB for transcription factors
- MBD4_HUMAN BRD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MBD4_HUMAN | 1.73 | -0.98 | 1.25 | n/a | n/a | |||
| BRD4_HUMAN | 1.88 | n/a | 5.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Thyroid