rs852427 chr7:5526563 T>C
- Sequence
ccagatatggccccatggaccccc[T/C]accccaacttgactttgattccag
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line) THP-1 (acute monocytic leukemia) IMR90 (lung fibroblasts)
- ASB for transcription factors
- JUN_HUMAN HIRA_HUMAN CNDH2_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.49 | 0.14 | 2.11 | n/a | No Hit | |||
| HIRA_HUMAN | 1.35 | 0.06 | 1.00 | n/a | n/a | |||
| CNDH2_HUMAN | 2.65 | n/a | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.68 | 0.78 | 1.12 | n/a | No Hit |
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