rs853516 chr12:25839609 C>A
- Sequence
tttatgaagtgccaacagaatttt[C/A]agaccttgtccatatttgttgagt
- ASB in cell types
- LNCaP (prostate carcinoma) TTC-1240 (Rhabdoid tumor of the kidney) LN95(Prostate adenocarcinoma) MCF7 WS8 cells
- ASB for transcription factors
- FOXA1_HUMAN HXB13_HUMAN ANDR_HUMAN SSXT_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.13 | 1.85 | 2.53 | n/a | No Hit | |||
| HXB13_HUMAN | -0.86 | 2.73 | 1.75 | 3.37 | Concordant | |||
| ANDR_HUMAN | -0.01 | 1.56 | 1.70 | n/a | No Hit | |||
| SSXT_HUMAN | -3.40 | 3.44 | 1.00 | n/a | n/a | |||
| TLE3_HUMAN | -3.98 | 2.17 | 2.50 | n/a | n/a |
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Motif analysis
