rs8539 chr2:197497294 T>C
- Sequence
ttgaacaagtttagctccaatgtt[T/C]ttgtatttatcttttaagtcaatt
- ASB in cell types
- HCT-116 (colon carcinoma)
- ASB for transcription factors
- PEX2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PEX2_HUMAN | 3.28 | -3.16 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, infant head circumference, irritible bowel syndrome, rheumatoid arthritis, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Vagina, Whole_Blood