rs855521 chr9:33623820 G>C

Sequence
aagtgcctccaatcccttgatata[G/C]agtttacaatgaaaaaagcagaga
ASB in cell types
MS-1 (Small cell lung carcinoma)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.52 0.51 3.7·10-31.00 1.42 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  hdl cholesterol,  ldl cholesterol,  total cholesterol,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Testis

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