rs857476 chr6:14598551 T>C
- Sequence
aggatgtgggtgtcctgcacactg[T/C]gttatttaagaacaaataaaatac
- ASB in cell types
- LNCaP (prostate carcinoma) LNCaP95 BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- ANDR_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.18 | 0.35 | 1.90 | -2.80 | Concordant | |||
| GCR_HUMAN | 1.08 | -0.20 | 1.14 | -2.76 | Concordant |
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Motif analysis
