rs858246 chr7:23181873 T>A
- Sequence
ccttcccaggacacactcaaagcg[T/A]cagagcggtccgctcttctcaagt
- ASB in cell types
- adult erythroblasts T47D (invasive ductal carcinoma)
- ASB for transcription factors
- RBBP5_HUMAN KDM6A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBBP5_HUMAN | 2.91 | n/a | 2.00 | n/a | n/a | |||
| KDM6A_HUMAN | 2.84 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, hdl cholesterol, ldl cholesterol, mitral annular calcium, refractive error, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Muscularis, Lung, Nerve_Tibial, Spleen, Stomach, Thyroid, Whole_Blood