rs859619 chr1:172719772 T>G
- Sequence
tttttgttttgtttttgtttgttt[T/G]ttttttttaaatccctgcacatac
- ASB in cell types
- A549 (lung carcinoma) THP-1 (acute monocytic leukemia) MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN ZN384_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.45 | 1.22 | 1.59 | n/a | No Hit | |||
| RAD21_HUMAN | 0.41 | 1.23 | 1.81 | n/a | n/a | |||
| ZN384_HUMAN | 1.55 | -1.55 | 1.00 | -5.35 | Concordant |
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Motif analysis
