rs863855 chr12:48957540 T>G

Sequence
cttcccacctccccgatcgcgcga[T/G]agctgcgcggtagctagcggcagt
ASB in cell types
HEK293 (embryonic kidney) K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) breast tumor
ASB for transcription factors
ANDR_HUMAN BRCA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN n/a 3.48 1.001.2·10-3 2.00 n/a No Hit
BRCA1_HUMAN 0.73 3.60 0.700.01 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Thyroid,  Whole_Blood

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