rs865103 chr16:88803691 T>C
- Sequence
cagcgcgcatgcgcgccccgtccc[T/C]tccctccccccgtgctctgccccg
- ASB in cell types
- HepG2 (hepatoblastoma) SMMC-7721 (hepatocellular carcinoma) WA01 (H1, human embryonic stem cells) HCT-116 (colon carcinoma)
- ASB for transcription factors
- PTEN_HUMAN E2F1_HUMAN RBM25_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PTEN_HUMAN | 3.36 | n/a | 2.00 | n/a | n/a | |||
| E2F1_HUMAN | 1.16 | 0.04 | 1.38 | -1.44 | Weak Concordant | |||
| RBM25_HUMAN | 1.92 | -0.98 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Pituitary, Whole_Blood