rs867568 chr3:58217632 A>C
- Sequence
gccaacgcgccaggacttgtcacc[A/C]cgtgggtggcagatctgaagcagc
- ASB in cell types
- HepG2 (hepatoblastoma) pancreas heart left ventricle thyroid gland
- ASB for transcription factors
- CTCF_HUMAN MNT_HUMAN ARI4B_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.32 | 0.42 | 1.09 | 2.37 | Discordant | |||
| MNT_HUMAN | 2.62 | -2.26 | 1.17 | -5.53 | Concordant | |||
| ARI4B_HUMAN | 2.54 | -2.58 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.67 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Brain_Cerebellum, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid