rs867842 chr5:181173173 C>T
- Sequence
tctttcattccactccaatttctc[C/T]agacccacgaacttcagctctact
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) GM12878 (female B-cells lymphoblastoid cell line) GM12890 (Lymphoblastoid Cell Lines) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- STAG1_HUMAN FOXK2_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 0.92 | 4.27 | 1.31 | n/a | n/a | |||
| FOXK2_HUMAN | -1.86 | 2.66 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.23 | 3.78 | 1.49 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid