rs871097 chr5:168781102 T>C
- Sequence
tcatggtgattcccgatgcaagag[T/C]aaccaggcatgcagcaacaccatt
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- RFX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFX1_HUMAN | 2.44 | -5.29 | 2.00 | 5.79 | Discordant |
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Motif analysis
Genetic associations
GRASP comorbid depressive syndrome and alcohol dependence, ldl cholesterol, microalbuminuria, premature ovarian failure, serum creatinine