rs873458 chr1:11986032 G>A
- Sequence
catgctgaggaggaatgtagaaac[G/A]gaagtggggtcacttccttccctt
- ASB in cell types
- MDM(monocyte derived macrophages) macrophages form periferal blood macrophages MV-4-11 (Childhood acute monocytic leukemia)
- ASB for transcription factors
- SPI1_HUMAN CDK9_HUMAN CEBPB_HUMAN MECOM_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 2.18 | 0.71 | 1.75 | -2.83 | Concordant | |||
| CDK9_HUMAN | 2.10 | -0.47 | 1.00 | n/a | n/a | |||
| CEBPB_HUMAN | -1.29 | 1.86 | 1.00 | n/a | No Hit | |||
| MECOM_HUMAN | 2.17 | -2.16 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Whole_Blood