rs874424 chr17:1736740 G>A
- Sequence
cctccattctcagtcacaggcctc[G/A]gggagctgctcagggaggcccagg
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) breast tumor CD14+ monocytes
- ASB for transcription factors
- TEAD3_HUMAN ESR1_HUMAN STAT1_HUMAN PPARG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TEAD3_HUMAN | 2.51 | -2.21 | 1.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.74 | -5.07 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.21 | -3.77 | 2.00 | n/a | No Hit | |||
| PPARG_HUMAN | 2.11 | -1.61 | 1.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.88 | -0.27 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood