rs875898 chr7:27161286 A>G
- Sequence
gagtctgcgtggagcccggaatct[A/G]ctgcagaggaggcaatgccaataa
- ASB in cell types
- HEK293 (embryonic kidney)
- ASB for transcription factors
- GLIS2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GLIS2_HUMAN | -2.56 | 2.48 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP asthma, body mass index (bmi), coronary artery disease (cad), fasting insulin, homa-ir, pulse rate, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Vagina, Whole_Blood