rs876614 chr2:10408451 C>T
- Sequence
tgatgcaacagctttcaggaaggc[C/T]tccagaaatgagctctaggtcagt
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) MCF7 (Invasive ductal breast carcinoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- NFIC_HUMAN CEBPG_HUMAN JUN_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFIC_HUMAN | n/a | 2.70 | 2.00 | 0.60 | Weak Concordant | |||
| CEBPG_HUMAN | -1.21 | 1.85 | 2.00 | n/a | No Hit | |||
| JUN_HUMAN | 0.68 | 1.20 | 1.23 | n/a | No Hit | |||
| FOXK2_HUMAN | -0.78 | 2.33 | 2.00 | n/a | No Hit | |||
| ATF1_HUMAN | n/a | 3.12 | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 8
Motif analysis
