rs876839 chr4:184734038 G>C
- Sequence
acccctcagacctgtgaggccgcg[G/C]ccgccgccgcccccgcggggccat
- ASB in cell types
- BEAS-2B (bronchial epithelium) 22RV1 (prostate carcinoma) SUM159PT (Triple negative breast cancer) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- GCR_HUMAN RBM25_HUMAN ANDR_HUMAN BRD2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.04 | 1.51 | 1.00 | n/a | No Hit | |||
| RBM25_HUMAN | 2.61 | 0.08 | 2.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.90 | n/a | 2.00 | n/a | No Hit | |||
| BRD2_HUMAN | 0.12 | 1.69 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis