rs876840 chr4:184734036 C>G

Sequence
ttacccctcagacctgtgaggccg[C/G]ggccgccgccgcccccgcggggcc
ASB in cell types
SUM159PT (Triple negative breast cancer) breast tumor
ASB for transcription factors
BRD2_HUMAN ANDR_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BRD2_HUMAN 1.85 0.40 0.011.00 1.00 n/a n/a
ANDR_HUMAN 1.83 -1.15 0.031.00 1.50 n/a No Hit
ESR1_HUMAN 1.97 -4.43 0.051.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid,  Vagina

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