rs876934 chr12:121916942 C>T
- Sequence
cctgtcagcttcctctttaggaac[C/T]caccagagggcagcaagctccttt
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) GM18526 (B – cells Lymphoblastoid Cell Lines) MOLM-13(acute monocytic leukemia(AML), Homo sapiens) TTC-1240 (Rhabdoid tumor of the kidney)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN ZIC2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.13 | 0.64 | 2.71 | -3.94 | Concordant | |||
| STAG1_HUMAN | 3.26 | -3.73 | 1.00 | n/a | n/a | |||
| ZIC2_HUMAN | 2.67 | -4.89 | 2.00 | 0.51 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood