rs877596 chr6:36121273 T>A
- Sequence
tgcccaacagactaagaagtttaa[T/A]ctttatcctagaggccactgagag
- ASB in cell types
- CD34+ hematopoietic stem cells-derived proerythroblasts D283 Med (medulloblastoma)
- ASB for transcription factors
- GATA1_HUMAN OTX2_HUMAN KDM6A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA1_HUMAN | 2.26 | -1.38 | 1.83 | -3.68 | Concordant | |||
| OTX2_HUMAN | 2.50 | -4.34 | 1.50 | -4.86 | Concordant | |||
| KDM6A_HUMAN | -1.62 | 2.55 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Uterus, Whole_Blood