rs877661 chr6:127266770 T>G
- Sequence
ggcagaacgatgaggcgccggagt[T/G]agctcgccggtgcgggtgcgggtg
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) MOLT-4 (Adult T acute lymphoblastic leukemia) MDA-MB-453 (breast adenocarcinoma)
- ASB for transcription factors
- MNT_HUMAN TYY1_HUMAN NELFA_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | 2.03 | 0.39 | 1.75 | n/a | No Hit | |||
| TYY1_HUMAN | 2.23 | n/a | 2.00 | n/a | No Hit | |||
| NELFA_HUMAN | 1.46 | -2.35 | 1.50 | n/a | n/a | |||
| STAT1_HUMAN | 0.00 | 2.07 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Testis, Whole_Blood