rs878019 chr12:58176486 G>C
- Sequence
tcatgaaatcgccagcagagggag[G/C]aatgatgagtagtctcctaccacc
- ASB in cell types
- T47D (invasive ductal carcinoma) GBM39 (Human brain tumor) ID00014 (lymphoblastoid cell, DiGeorge syndrome) EOL-1 (Acute myeloid leukemia)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.07 | 2.35 | 1.38 | 1.64 | Weak Concordant | |||
| SMC3_HUMAN | -1.82 | 2.95 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | -1.04 | 1.79 | 1.50 | n/a | n/a |
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Motif analysis
