rs878461 chr2:127415841 T>C
- Sequence
ttggttctagctcctttgcttggg[T/C]cttcatccatgcagcgaattcctt
- ASB in cell types
- MCF7L-P(immortalized breast epithelial cell line) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ZFX_HUMAN ESR1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 2.94 | -3.02 | 1.00 | 4.70 | Discordant | |||
| ESR1_HUMAN | 2.06 | -2.03 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 2.26 | 0.37 | 1.50 | n/a | No Hit |
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Motif analysis
