rs880234 chr16:88706520 C>T
- Sequence
cgccgccacagtctgcgacgggac[C/T]cggcgtgcccatgtgtcaggtggg
- ASB in cell types
- adult erythroblasts 22RV1 (prostate carcinoma) HEK293T (embryonic kidney) breast tumor
- ASB for transcription factors
- HCFC1_HUMAN ANDR_HUMAN ZFX_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HCFC1_HUMAN | 2.08 | n/a | 2.50 | n/a | n/a | |||
| ANDR_HUMAN | 2.49 | 0.13 | 1.80 | 1.77 | Weak Discordant | |||
| ZFX_HUMAN | -0.80 | 1.57 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.07 | 1.88 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Thyroid, Vagina, Whole_Blood