rs886238 chr17:42063960 C>A
- Sequence
gatgccccctgctgtcttggcaac[C/A]gaggccgaggcaacagttggtggt
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.01 | 1.04 | 1.33 | 2.87 | Concordant | |||
| RAD21_HUMAN | -0.47 | 1.65 | 1.42 | n/a | n/a |
Items per page:
1 – 2 of 2
Motif analysis
