rs886423 chr6:30814428 G>C
- Sequence
tcctcagactgccttgaatccagg[G/C]gtggccacatgactgggtaatgag
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) HUVEC-C (HUVEC, umbilical vein endothelial cells) primary human neonatal keratinocytes
- ASB for transcription factors
- MNT_HUMAN ATF3_HUMAN SMCA4_HUMAN ZEB2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | n/a | 3.25 | 3.00 | n/a | No Hit | |||
| ATF3_HUMAN | 0.80 | 1.25 | 2.25 | n/a | No Hit | |||
| SMCA4_HUMAN | n/a | 1.85 | 3.50 | n/a | n/a | |||
| ZEB2_HUMAN | n/a | 1.70 | 3.00 | n/a | No Hit | |||
| MTG16_HUMAN | n/a | 3.00 | 3.00 | n/a | n/a |
Items per page:
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Motif analysis
No data available
Genetic associations
GRASP abnormal involuntary movement scale, cystatin c in serum, fasting insulin, hdl cholesterol, height, homa-b, homa-ir, microalbuminuria, parkinsons disease (pd), tardive dyskinesia, total cholesterol, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood