rs888096 chr2:37376658 G>A
- Sequence
tggtacatcttttccatccctcaa[G/A]tagtgaaattactgctttgttgca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) Th1-cells CTV-1 (Adult T acute lymphoblastic leukemia) GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- SKIL_HUMAN TBX21_HUMAN NFAC3_HUMAN EP300_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SKIL_HUMAN | 1.20 | -1.20 | 1.00 | n/a | n/a | |||
| TBX21_HUMAN | 1.63 | -1.58 | 1.17 | n/a | No Hit | |||
| NFAC3_HUMAN | 1.39 | -1.39 | 1.00 | n/a | No Hit | |||
| EP300_HUMAN | 1.77 | 0.21 | 1.07 | n/a | n/a | |||
| RUNX3_HUMAN | 2.05 | -1.73 | 1.00 | n/a | No Hit |
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