rs888531 chr12:108826613 T>C

Sequence
tgaaaacaagatgcagaaagtctc[T/C]gtgacccggcttcctggcttctct
ASB in cell types
HUVEC-C (HUVEC, umbilical vein endothelial cells)
ASB for transcription factors
TF65_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TF65_HUMAN 2.21 1.16 1.7·10-41.00 2.33 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP college completion,  hdl cholesterol,  ldl cholesterol,  total cholesterol,  waist hip ratio
GTEx eQTL Adipose_Visceral_Omentum,  Adrenal_Gland,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Cells_EBV-transformed_lymphocytes,  Esophagus_Mucosa,  Liver,  Muscle_Skeletal,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Whole_Blood

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