rs889911 chr2:86221297 T>C

Sequence
cagccagcaggaagcagcacaaca[T/C]gcaaagctgaattttaggctgggg
ASB in cell types
GM18505 (female B-cells Lymphoblastoid Cell Lines) tibial artery prostate gland esophagus muscularis mucosa
ASB for transcription factors
CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN SMC3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.26 3.08 1.001.2·10-56 1.97 n/a No Hit
STAG1_HUMAN 0.05 2.20 1.001.1·10-8 2.81 n/a n/a
RAD21_HUMAN 1.34 2.16 1.000.02 1.71 n/a n/a
SMC3_HUMAN n/a 1.98 1.000.04 1.75 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP cystatin c in serum,  homa-ir,  rheumatoid arthritis,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Hippocampus,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Testis,  Thyroid,  Uterus,  Whole_Blood

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