rs894462 chr11:64448946 G>C
- Sequence
acaccatcctgccctgcccgagtc[G/C]tggctctccagtctctttcgggga
- ASB in cell types
- T47D (invasive ductal carcinoma) A549 (lung carcinoma) K562 (myelogenous leukemia) KB (cervical adenocarcinoma)
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.35 | 1.14 | 1.64 | n/a | n/a | |||
| SMC3_HUMAN | 0.88 | 1.28 | 1.97 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Whole_Blood