rs897293 chr10:124601481 T>G

Sequence
ccagccaggattgggggttcaagg[T/G]accgcatttgccacgtgagggagt
ASB for transcription factors
RUNX2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RUNX2_HUMAN 1.81 -3.12 0.021.00 1.33 0.73 Weak Discordant
Items per page:
1 – 1 of 1

Motif analysis

RUNX2_HUMAN Weak Discordant
RUNX2_HUMAN pic

Genetic associations

GRASP height,  parkinsons disease,  total cholesterol,  total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Brain_Substantia_nigra,  Colon_Sigmoid,  Esophagus_Muscularis,  Liver,  Lung,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

Download