rs897300 chr10:124632333 C>T
- Sequence
ccagcacacactcaggacaggact[C/T]gtgaaaccacctcgctcgcagctt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM02630 (Fanconi anemi) SUP-B15 (Childhood B acute lymphoblastic leukemia) tibial nerve
- ASB for transcription factors
- GCR_HUMAN CTCF_HUMAN EP300_HUMAN TEAD4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.09 | 2.91 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.79 | 1.51 | 1.16 | n/a | No Hit | |||
| EP300_HUMAN | -2.45 | 1.65 | 1.33 | n/a | n/a | |||
| TEAD4_HUMAN | -1.86 | 2.21 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood