rs897984 chr16:30875322 T>C
- Sequence
gtgcagccctgcgcactgctgagg[T/C]tgcccgaggtctcagcctcggcgg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293T (embryonic kidney) CD34+ hematopoietic stem cells tibial nerve
- ASB for transcription factors
- TIF1B_HUMAN CTCF_HUMAN ZN519_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TIF1B_HUMAN | 0.39 | 3.65 | 1.67 | n/a | n/a | |||
| CTCF_HUMAN | 0.32 | 1.63 | 1.29 | n/a | No Hit | |||
| ZN519_HUMAN | -5.22 | 3.04 | 2.00 | 3.53 | Concordant | |||
| STAG1_HUMAN | 1.25 | 1.78 | 1.00 | n/a | n/a | |||
| ZN577_HUMAN | 2.41 | -2.01 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood