rs898816 chr3:194672489 G>C
- Sequence
gcgtccggcgagaaactagagcac[G/C]tcggaaacatggcggttcctattc
- ASB in cell types
- CD14+ monocytes VCaP (prostate carcinoma) adult erythroblasts MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- STAT1_HUMAN HCFC1_HUMAN TYY1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | -1.15 | 2.65 | 1.80 | n/a | No Hit | |||
| HCFC1_HUMAN | -0.97 | 2.85 | 1.50 | n/a | n/a | |||
| TYY1_HUMAN | 1.85 | 0.22 | 2.38 | n/a | No Hit | |||
| CTCF_HUMAN | 0.48 | 0.79 | 1.11 | n/a | No Hit | |||
| ATF7_HUMAN | -1.24 | 1.24 | 1.00 | n/a | No Hit |
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