rs899729 chr16:88635372 C>A

Sequence
caggtcgtgcactgcacaaggact[C/A]ccagcagaggacgaggactgacat
ASB in cell types
GM12892 (female B-cells lymphoblastoid cell line) GM17942 (lymphoblastoid cell)
ASB for transcription factors
CTCF_HUMAN STAG1_HUMAN RBM25_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN -0.57 1.94 1.004.2·10-7 2.12 1.35 Weak Concordant
STAG1_HUMAN -3.78 3.67 1.007.3·10-7 1.00 n/a n/a
RBM25_HUMAN -0.72 1.11 1.000.02 2.00 n/a n/a
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Motif analysis

CTCF_HUMAN Weak Concordant
CTCF_HUMAN pic

Genetic associations

GRASP diastolic blood pressure (dbp),  hdl cholesterol,  irritible bowel syndrome,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Spinal_cord_cervical_c-1,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Nerve_Tibial,  Pancreas,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Whole_Blood

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