rs899983 chr3:138082371 T>C
- Sequence
gagctctggactggtaatgaatga[T/C]gtcaaagctgctggcagccaattg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- CREB1_HUMAN ZN629_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | -4.19 | 4.30 | 1.00 | 5.09 | Concordant | |||
| ZN629_HUMAN | -3.07 | 2.02 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP cystatin c in serum, hdl cholesterol, homa-b, infant head circumference, lp-pla2 activity, obesity with early age of onset (age >2), variant creutzfeldt-jakob disease, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid